ABNORMAL GENE EXPRESSION IN CLONED MICE
Eric Wong
Most cloned mammals derived by nuclear transfer die in gestation or show physical abnormalities at birth, including enlarged placenta and large offspring syndrome. The genetic basis for these problems is unknown but may be due to abnormal gene expression. During cloning by nuclear transfer, the donor nucleus must be reprogrammed to accurately regulate gene expression in a developing embryo, otherwise developmental defects will occur.
In the October 1, 2002, issue of the Proceedings of the National Academy of Sciences USA, a team of researchers examined gene expression in cloned mice. Using microarray analysis, the expression patterns of over 10,000 genes expressed in the placenta or liver were compared between neonatal control and cloned mice. The effect of the nuclear transfer process per se or the source of the donor nuclei on the gene expression profile was examined.
Cloned mice were generated following the transfer of nuclei from cultured embryonic stem cells or newly isolated cumulus cells. As expected, many cloned mice exhibited large offspring syndrome and/or an enlarged placenta. Analysis of placental gene expression revealed that 286 genes showed at least a 2-fold increase or decrease in expression level in cumulus cell-derived clones compared to normally fertilized controls. Similarly, 221 genes were
2-fold over- or underexpressed in embryonic stem cell-derived clones compared to controls.
The majority of the abnormally regulated placental genes were common to both cumulus-derived and embryonic stem cell-derived clones. A smaller subset of genes was abnormally regulated in only one clone type or the other. Overall about 76% of the genes that showed abnormal regulation were common among the cumulus-derived and embryonic stem cell-derived clones. The same genes, however, that were overexpressed in cumulus cell-derived clones were not necessarily overexpressed in embryonic stem cell-derived clones and vice versa. A wide array of genes is represented in this list of abnormally expressed genes, but no definitive unifying theme is readily apparent.
In addition to an analysis of placental gene expression, expression of neonatal liver genes was also compared between the clones and controls. As expected, the liver results were similar to that observed with placenta, except to a lesser extent. Some genes in the clones were overexpressed while others were underexpressed, with parallel over- or underexpression between clone types seen for some genes but not others. A subset of genes was only abnormally expressed in one clone type or the other. In general, the genes abnormally expressed in the fetal liver were different from those abnormally expressed in the placenta.
Of the over 10,000 genes examined in this study, approximately 4% show abnormal gene expression in cloned mice compared to normal control mice. Most of the abnormal gene expression is related to the nuclear transfer process per se, since mice generated from both cumulus cells and cultured embryonic stem cells showed many common abnormally regulated genes. However, the source of the nuclei for nuclear transfer also affected the pattern of abnormal gene expression. Presumably a similar pattern of abnormal gene expression occurs in livestock cloned by nuclear transfer. Understanding why these genes are abnormally regulated and how this can be avoided remains a major challenge to improving the efficacy of the cloning process.
Reference
Humpherys D et al. 2002. Abnormal gene expression in cloned mice derived from embryonic stem cell and cumulus cell nuclei. Proceedings of the National Academy of Sciences
USA 99(20): 12889-12894.

WHERE'S THE BEEF? TRANSGENIC CATTLE PRODUCE HUMAN IMMUNOGLOBULINS
Eric Wong
Human polyclonal antibodies (hPAB) are valuable therapeutics for treating many human diseases because they are less likely to elicit an immune response compared with antibodies from other species. However, the supply of hPAB is limited because they are derived from human donors and people cannot be hyperimmunized to boost production of an important therapeutic antibody. Furthermore, any product purified from human blood always runs the risk of viral contamination. Therefore, an alternative method for producing large quantities of hPAB in a non-human system would be highly desirable.
In the September 2002 issue of Nature Biotechnology, a team of researchers from Japan and the US report the generation of cloned calves that express human immunoglobulins from a human artificial chromosome. These calves were generated using a combination of human artificial chromosome and nuclear transfer technologies. The resultant transgenic calves are called transchromosomic because they contain a human artificial chromosome in addition to their normal complement of bovine chromosomes. An artificial chromosome is a reconstructed, truncated version of a natural chromosome that retains the properties of a natural chromosome.
Immunoglobulins or antibodies consist of a large and a small protein subunit, known as the heavy and light immunoglobulin chains, respectively. The genes encoding these heavy and light immunoglobulin chains are located on different chromosomes. During the course of antibody production, the heavy and light immunoglobulin chain genes are rearranged by genetic recombination and altered by somatic mutation to generate a large variety of heavy and light protein chains with different amino acid sequences. The pairwise combination of one heavy chain with one light chain results in an almost unlimited number of immunoglobulin molecules that are capable of recognizing a vast array of foreign molecules.
A human artificial chromosome of approximately 10 megabases in size (one megabase equals one million base pairs of DNA) was constructed to contain the unrear-ranged human heavy and light immunoglobulin chain genes. The human immunoglobulin artificial chromosome was transferred into primary bovine fibroblasts. Because standard methods for introducing foreign DNA into cells are limited by the size of the transferred DNA fragment, a microcell-mediated chromosome transfer procedure was utilized to introduce the megabase-sized artificial chromosome.
Fibroblasts containing the human DNA fragment were isolated and used in a subsequent nuclear transfer step to produce cloned fetal calves. Analysis of the fetuses revealed that 1) the human artificial chromosome was stable in cells; 2) the heavy and light immunoglobulin chains had undergone functional rearrangement; and 3) the human immunoglobulin chain genes were transcribed in cells. Of particular note was the correct functional rearrangement of the immunoglobulin genes. Because the site for maturation for antibody-producing B cells differs between humans (bone marrow) and cattle (spleen), it was unknown if human genes could be rearranged in cattle. These data show that rearrangement appears to be more a property of the DNA sequence than the cellular environment in which maturation occurs.
To generate the cloned transchromosomic calves, the transgenic fetal cell lines were used in a second round of nuclear transfer. Six calves were produced following nuclear transfer, of which four survived and were healthy and phenotypically normal. Again in the transchromosomic calves, the human artificial chromosome was stable and the human immunoglobulin chain genes were rearranged and expressed. Human immunoglobulin proteins were secreted at levels ranging from 13-258 ng/ml in blood samples.
These results demonstrate that human immunoglobulin heavy and light chain genes can be stably transferred and functionally rearranged and expressed in cattle cells. This is an exciting first step towards the large-scale production of human polyclonal antibodies for therapeutic purposes. However, a number of technological hurdles remain. For example, in these transchromosomic cattle, the endogenous bovine heavy and light chain genes are still functional. Thus chimeric antibodies containing combinations of human and bovine heavy and light chains likely exist, which would complicate efforts to selectively purify the product to
obtain just the human immunoglobulin molecules. The deletion of the endogenous bovine immunoglobulin genes by gene targeting technology prior to human artificial chromosome transfer would alleviate this problem.
Nevertheless the development of a "humanized" bovine immunoglobulin system would be tremendously useful because cattle produce large quantities of antibodies and can be hyperimmunized with any antigen. With the generation of cattle containing human genes, the late Clara Peller, of the endearing Wendy's hamburger ads, might be asking "Where's the beef?" for an entirely different reason.
Reference
Kuroiwa Y et al. 2002. Cloned transchromosomic calves producing human immunoglobulin. Nature Biotechnology 20: 889-894.
Eric A. Wong
Department of Animal and Poultry Sciences
Virginia Tech
ewong@vt.edu
LET THE FACTS SPEAK FOR THEMSELVES
Kimball Nill
Farmers in the American Midwest have suffered their worst drought in decades this year. Agricultural productivity will be substantially reduced and water reservoirs severely depleted. Yet the situation could have been much more serious had it not been for the adoption of herbicide-resistant biotech crops, which have allowed the increased practice of no-till farming. No-till allows a farmer to plant a new crop directly into the soil through the residue of the previously harvested crop; the plant residue breaks down, helping to increase soil organic matter.
Traditionally, growers would have cleared their previous crop and deep plowed, in part to hinder the re-growth of weeds that would otherwise smother the young crop plants. Deep plowing leaves fields exposed to wind and erosion. No-till not only minimizes erosion, but also maintains the natural moisture in the soil so crops get a good start with less need for watering. Additionally, less carbon escapes from the soil to contribute to greenhouse gas accumulation in the atmosphere. There is also a considerable reduction in the amount of tractor fuel used in field operations.
Farmers in the US and in an increasing number of countries around the world are seeing the benefits of a technology that provides cleaner, less laborious planting with ecological advantages. But in Europe, environmental activists and Green party groups have attacked the technology on the grounds that it is unnatural or unsafe. US farmers are aware of the debate in the European Union over the adoption of agricultural biotechnology. They are also aware of the many issues and controversies surrounding the debate, as well as the myths and misinformation that have been put forward by opponents of agricultural biotechnology, fueling much of the discussion and often leading to a misunderstanding of the use of the technology and the advantages it can bring.
Recent reports from activists state that widespread growing of biotech herbicide-tolerant crops has harmed the environment, ruined US agricultural exports, and cost US agriculture billions of dollars a year. Such reports, especially that many farmers are opposed to biotechnology, prompted American farmers to defend their use of genetically modified crops. In September, nine major farmer organizations of the United States, representing nearly 60 percent of total US agricultural production, published a report: `Let the Facts Speak for Themselves.' It attempts to correct current misinformation and allows farmers to present their perspective on the contribution of biotechnology and genetically modified crops to American farming.
The report lists a series of `factoids'a term commonly referring to unverified or inaccurate information which is presented, mostly by activists and media, as factual and accepted as true because of frequent repetition. Each factoid is then redressed in the report with factual and verifiable information from technical and scientific points
of view as well as knowledge garnered from the farmers' personal experience. The nine groups supporting the report are: American Agri-Women, American Soybean Association, National Chicken Council, National Corn Growers Association, National Cotton Council, National Milk Producers Federation, National Potato Council, National Turkey Federation, and the United Soybean Board.
According to the report's author, Kimball Nill, Technical Director of the American Soybean Association, various pressure groups and some media are deceiving the public by making unsubstantiated assertions about US farmers' adoption of biotechnology. "Their random statements were ludicrous, untrue, and deliberately misleading," he said at the launch of the report in London, UK, on September 16, 2002. The report points out that biotech crops benefit every link in the food chain from the farmer to the consumer.
In the future, even more exciting agbiotech innovations will continue to improve food quality, make farming more sustainable, increase productivity, reduce pressure on land use, and reduce the environmental footprint of agriculture. A number of examples of likely innovations are:
Low-phytate soybeans and corn
Poultry and swine producers in most countries currently add mined and processed phosphate to their feed rations to encourage optimal animal growth. The added phosphate is required to supplement the natural phosphate already present in traditional soybean and corn varieties, because the phosphate extant in traditional soybeans and corn exists in the form of an insoluble phytate. Monogastric animals such as chickens and pigs lack the phytase enzyme needed for digestion of phytate. Virtually all of the extant corn/soy phytate and part of the added (mined) phosphate is excreted by the animals, which can sometimes contribute to pollution problems. Innovations in biotechnology can likely reduce phytate in most feed crops. When low-phytate soybean meal is mixed with low-phytate corn to comprise animal feed rations, phosphate emissions in swine and poultry manure can be reduced by half. The iron, calcium, and protein in the ration are also absorbed more completely by the animal, which reduces anemia and nitrogen excretion.
High-phytase soybeans and corn
In those countries and regions where pollution from manure phosphate causes severe problems (e.g., The Netherlands), it has become common practice to reduce phosphate excretions by including a microbial-source phytase enzyme supplement in animal feed. Research shows that adding the phytase supplement to feed rations can cut phosphate levels in swine and other monogastric animals' manure by as much as half, since the animal is able to digest the extant plant-source phosphorous; thereby allowing less (mined) phosphate to be added as a feed ingredient. Phytase has also been produced in transgenic crops grown as feed. Use of the crops has been shown to be as beneficial as adding purified enzyme to animal feed.
High-oleic soybeans
High-oleic soybeans contain more than 80% oleic acid content in their oil. This contrasts with the 23% oleic acid content of traditional soybean oil. Because oleic acid has greater heat and oxidation resistance than the other fatty acids in soybean oil, high-oleic soybean oil is naturally more resistant to degradation by heat and oxidation over time so it requires less or no hydrogenation, depending on the intended oil application. Other research has shown that feeding of high-oleic soybean meal full-fat (i.e., with the oil in it) to cows and chickens results in a lowering of the saturated fat levels in the milk and poultry meat thereby produced. Such fat changes are also produced through feeding of traditional canola oil. High oil grain developed through biotechnology may be commercially available within five years.
High lysine, high-methionine, high-threonine, etc. corn and soybeans
In the future, American farmers will be able to grow biotech corn and soybean varieties that contain higher levels of the amino acids lysine, methionine, threonine, and cystine. Poultry and swine can only utilize amino acids from their feed protein in highly specific ratios. Those animals metabolize and excrete, in the form of nitrogen pollution, the amino acids that are caused to be "in excess" by a shortfall in the primary amino acids required in those ratios. The primary requirements for corn/soymeal-based feed rations are usually lysine and methionine. High-lysine/high-methionine corn and soybean meals could allow feed ration formulations that reduce animal nitrogen excretion by providing an improved balance of essential amino acids. That can be accomplished now, but only by adding synthetic lysine and methionine to the feed ration, which increases feed costs.
`Let the Facts Speak for Themselves' makes the case for how biotech crops used worldwide are the product of genetic modification and selection that has taken place for centuries, and that today's use of biotechnology is simply extending plant breeding techniques used for the past 100 years to ensure a safe and wholesome food supply.
Widespread adoption by farmers is evident from the numbers. This year's US soybean harvest is expected to be more than 75% biotech, with herbicide-resistant varieties planted on 90% of soybean farmsa clear indication that US farmers have adopted a technology that works well in their individual operations. Argentina reports that 98 percent of their soybean crop is planted to biotech herbicide resistant varieties, and farmers in India, China, South Africa and even several European countries are now seeing first-hand the advantages afforded by agricultural biotechnology.
`Let the Facts Speak for Themselves,' which refutes the attack on a technology embraced by the farming community, has been well-received in Europe and the UK. It is available at http://www.tomorrowsbounty.org. By answering questions and challenging unsubstantiated assumptions, it represents an important step in the process of educating consumers and media alike.
Kimball Nill
American Soybean Association
St. Louis, MO
knill@asaim.soy.org