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Section IV. Elements of Containment
APPENDIX P OF THE NIH GUIDELINES addresses the containment conditions and practices required for recombinant DNA research involving plants. Achieving containment for genetically modified organisms is an exercise in risk management. |
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The Guidelines state that the principle purpose of GMO containment is to: 1. Avoid unintentional transmission of rDNA-containing plant genomes or release of rDNA-derived organisms associated with plants; 2. Minimize the possibility of unanticipated deleterious effects on organisms and ecosystems outside of the experimental facility; 3. Avoid the inadvertent spread of a serious pathogen from a greenhouse to a local agricultural crop; and 4. Avoid the unintentional introduction and establishment of an organism in a new ecosystem. Environmental protection is the predominant goal; the key to achieving it lies in understanding the biological systems involved and accepted scientific research practices. Containment is accomplished through a combination of management practices, physical barriers, and biological methods intended to prevent GMO transfer or survival. In general, containment requirements are more stringent if plant-associated materials, such as insects and microorganisms, are included in the experiment. If insect quarantine measures are required, regardless of the presence of rDNA material, managers should contact APHIS for guidance. Research involving transgenic plants at the BL1-P or BL2-P containment levels requires little more than the basic facilities, equipment, and protocols common to most research greenhouses. However, greenhouses that offer high-level BL3-P and BL4-P containment are expensive to build and operate. The cost of greenhouse containment at these levels may be prohibitive for many institutions. Other means of attaining a high level of containment, such as use of a growth chamber or growth room, may provide a suitable alternative at a fraction of the cost. The book, Containment Facilities and Safeguards For Exotic Plant Pathogens and Pests11, offers descriptions of high security containment and quarantine facilities operating around the world. Growth chambers, tissue culture rooms, incubators, and biological safety cabinets are commonly used in developing GMOs. Biosafety regulations for these facilities are included in Appendix G of the NIH Guidelines, which specifies physical containment standards for the laboratory. Standard practices for plants in greenhouses are summarized in Table 3.
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TABLE 3. Comparison of standard practices for containment of plants in greenhouses
| BIOSAFETY LEVEL1-P | BIOSAFETY LEVEL 2-P | BIOSAFETY LEVEL 3-P | BIOSAFETY LEVEL 4-P |
| discretionary access personnel must read and follow instructions |
access limited to individuals directly involved with experiments personnel must read and follow instructions |
access restricted to required persons only personnel must read and follow instructions |
access restricted; secure locked doors; record
kept of all entry/exit; clothing change/shower
room through air-lock is only means of entry/exit all who enter advised of hazards and safeguards |
| procedures followed are appropriate for organisms record kept of experiments in facility |
greenhouse manual to advise of consequences; give contingency plans record kept of experiments and movement in/out of greenhouse |
greenhouse manual to advise of consequences; give contingency plans record kept of experiments and movement in/out of facility |
greenhouse manual prepared and adopted; personnel required to follow contingency plans
record kept of experimental material moving in/out of greenhouse |
| containment required for movement in/out of greenhouse | containment required for movement in/out; external decontamination | special packaging containment for in/out; airlock or decontamination for removal entry of supplies/materials through special chamber |
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| BIOSAFETY LEVEL1-P | BIOSAFETY LEVEL 2-P | BIOSAFETY LEVEL 3-P | BIOSAFETY LEVEL 4-P |
| biologically inactivate experimental organisms at end of experiment pest control program |
biologically inactivate experimental organisms at end of experiment; decontaminate gravel periodically pest control program |
biologically inactivate experimental organisms at end of experiment (including water runoff); decontaminate equipment & supplies pest control program |
decontaminate experimental materials prior to removal from area by autoclave/other means all runoff water collected and decontaminated chemical control program for pests and pathogens |
| appropriate caging and precautions for escape of motile organisms | appropriate caging and precautions for escape of motile organisms sign for restricted experiment in progress with plant names, person responsible, special requirements |
appropriate caging and precautions for escape of motile organisms sign for restricted experiment in progress; special requirements, person responsible; biohazard symbol if a risk to humans |
appropriate caging and precautions for escape of motile organisms sign for restricted experiment in progress; person responsible, special requirements; biohazard symbol if a risk to humans |
| minimize aerosol creation to reduce contamination protective clothing worn to minimize dissemination; hands washed before leaving facility |
standard microbiological procedures to decontaminate equipment and containers street clothing removed; complete change to lab clothing which is autoclaved before laundering |
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| report/record accidents | |||
| BIOSAFETY LEVEL1-P | BIOSAFETY LEVEL 2-P | BIOSAFETY LEVEL 3-P | BIOSAFETY LEVEL 4-P |
Physical containment is achieved through facility design and equipment. Choices in the type of glazing, sealing, screening, air flow system, and other features all affect the degree to which a greenhouse is capable of isolating transgenic plants, plant parts, and associated organisms from the surrounding environment. These systems are also effective in keeping unwanted pests out of the greenhouse.
The term glazing refers to any transparent material (as glass) used for windows. Properly
installed and regularly maintained greenhouse glazing of any typical material can provide a suitable barrier for transgenic research materials. The type of glazing most commonly used consists of single panes of tempered glass installed by lapping each pane over the one below. The care taken in installing and maintaining the glazing determines its overall effectiveness. Improperly installed or loose-fitting glazing material can leave gaps through which transgenic materials could be released unintentionally.
Caulking materials are commonly used to seal glass panes, sills, and small openings in and around greenhouse structures. Caulking and sealing restricts the passage of insects and assists with temperature control within the greenhouse; however, it should not be considered a substitute for well-fitting structural components. Additional caulking and sealing can help to upgrade a conventional facility to meet the standards of an approved containment facility. Typical situations where the addition of caulk provides an extra measure of containment are
illustrated in Figures 1 and 2.
When properly sized, installed, and maintained, screen can keep pests and pollinators out of a
greenhouse or, conversely, keep experimental organisms in. The integrity of a screening system is determined by several factors including the nature of the material, the size and morphology of the insects being excluded, the hole shape and size, and the air pressure applied on either side of the screen. The maximum hole size generally capable of restricting certain insect species is shown in Table 4. Anti-Virus® screening12 is a commercial product advertised to be 100% effective in excluding leafminers, melon aphids, and whiteflies.
*The number of threads per linear inch defines the mesh size of the screen; e.g., a 30-mesh screen has 30 threads per inch.
Negative Air Pressure
Containment of airborne pollen, spores, and insects is a significant challenge. One strategy to help achieve it is to create negative air pressure within a facility. Negative pressure exists when the amount of air exiting a space exceeds the air intake. Negative pressure bench-top chambers can increase containment of pathogens and insects within greenhouses, screenhouses, and laboratories. A chambered wood and clear plastic box fitted with a blower and filtration system can produce negative pressure on a small scale and at a relatively low cost (Fig. 3).
Insect cages, when properly used, can increase the containment level of a particular experiment as long as the factors listed above pertaining to screen characteristics and sizing are respected. Though researchers may fashion their own cages out of metal, wood, glass, or screen, commercial models are also available. The Bugdorm® insect cage (Fig. 4) is a type of cage available from biological and greenhouse supply companies.
The geographical location of a greenhouse provides an element of physical containment. Research involving a crop pest or noxious weed, for instance, presents a greater risk if the facility is located in an area adjacent to large cropping areas susceptible to the pest. When planning new facilities, it is important to determine what type of agricultural activities will be occurring in adjacent areas before siting. Most work with GMOs, however, does not require remote or otherwise special siting since other safeguards are usually adequate.
Biological processes can provide a highly effective means of preventing unintended transmission of genetic material. Biological containment methods include reproductive, spatial, and temporal isolation. Appendix P of the NIH Guidelines provides a partial list of the biological containment practices appropriate for plants, microbes, and insects. Scientists and technicians conducting transgenic research generally best understand the biological systems involved. They are at liberty to devise other means of biological containment in their experimental protocols, subject to review by the IBC.
One or more of the following procedures can prevent dissemination of genetic material by pollen
or seed:
Bagging flowers is a standard practice used by breeders to prevent the contamination of selected plants with pollen from adjacent plants. Female flowers can be covered to prevent insect pollinators or windblown pollen from landing on the receptive surface. Male flowering structures can be bagged to prevent pollen from being disseminated by insect vectors, wind, or mechanical transfer (Fig. 5.1-5.2).
Paper and glassine bags are most commonly used to cover flower heads. Flower heads can be removed prior to pollen or seed production in cases where the research protocol does not require seed collection.
Genetic and Crop Standards of the AOSCA14,
published annually by the Official Seed Certifying Agencies, describes the isolation distances required to avoid genetic contamination by pollen dispersal. Table 5 shows isolation distances for selected crops. In order to be considered an environmental risk, transgenic pollen must be able to fertilize plants of a sexually compatible species growing in the vicinity.
Source: Modified from Table 5, Minimum Land, Isolation, Field And Seed Standards, Adapted from Table 5, 7 CFR § 201.76 http://www.aphis.usda.gov/biotech/isolate.html
1. Distance between fields of Certified classes of the same variety may be reduced to 10 feet regardless of class or size of field.
2. This distance applies for fields over five acres. For alfalfa fields of five acres or less that produce the Foundation and Registered seed classes, the minimum distance from a different variety or a field of the same variety that does not meet the varietal purity requirements for certification shall be 900 and 450 feet, respectively.
3. Isolation distance for Certified seed production of varieties adapted to the northern and central regions shall be 500 feet from varieties adapted to the southern region.
4. There must be at least 10 feet or a distance adequate to prevent mechanical mixture between a field of another variety (or non-certified area within the same field) and the area being certified. The 165 feet isolation requirement is waived if the area of the "isolation zone" is less than 10 percent of the field eligible for the Certified class. The "isolation zone" is that area calculated by multiplying the length of the common border(s) with other varieties of alfalfa by the average width of the field (being certified) falling within the 165 feet isolation. Areas within the isolation zone nearest the contamination source shall not be certified.
5. No isolation is required for the production of handpollinated seed.
6. When the contaminant is of the same color and texture, the isolation distance may be modified by (1) adequate natural barriers, or (2) differential maturity dates provided there are no receptive silks in the seed parent at the time the contaminant is shedding pollen. In addition, dent sterile popcorn requires no isolation from dent corn.
7. Where the contaminating source is corn of the same color and texture as that of the field inspected or white endosperm corn that is optically sorted, the isolation distance is 410 feet and may be modified by the planting of pollen parent border row.
8. Minimum isolation shall be 100 feet if the cotton plants in the contaminating source differ by easily observed morphological characteristics for the field to be inspected. Isolation distance between upland and Egyptian types is 1320, 1320, and 660 for Foundation, Registered, and Certified, respectively.
9. Isolation between classes of the same variety may be reduced to 25% of the distance otherwise required.
10. Isolation between diploids and tetraploids shall at least be 15 feet.
11. Border removal applies only to fields of five acres or more. These distances apply when there is no border removal. Removal of a 9-foot border (after flowering) decreases the required distance to 600, 225, and 100 feet for cross-pollinated species, and to 30, 15, and 15 feet for apomictic and selfpollinated species. Removal of a 15-foot border allows a further decrease to 450, 150 and 75 feet for cross-pollinated species.
12. Application to establish pedigree must be made within one year of seeding. The crop will remain under supervision of the certifying agency as long as the field is eligible for certification.
13. Distance adequate to prevent mechanical mixture is necessary.
14. The minimum distance may be reduced by 50 percent if different classes of the same variety are involved.
15. Required isolation between classes of the same variety is 10 feet.
16. Isolation between varieties or non-certified field of the same variety shall be 10 feet if ground drilled, 50 feet if ground broadcast, and 100 feet if aerial seeded.
17. Does not apply to Helianthus similes, H. ludens or H. agrestis.
18. An isolation distance of 5,280 feet is required between oil and non-oil sunflower types and between either type and other volunteer or wild types.
19. The minimum distance may be reduced by 50 percent if the field is adequately protected by natural or artificial barriers.
Crop breeders have identified numerous crops with sexually compatible wild or weedy relatives.
Examples of crops that outcross with wild relatives are given in Table 6.
Depending on the location of the containment facility, the choice of season in which to conduct an experiment may constitute an appropriate biological containment method for plants. For instance, growing transgenic sunflowers only during the winter in northern climates insures that any escaped pollen would be of no consequence to local plants or weeds.
Effective physical containment of bacteria, viruses, and other microbes can be extremely difficult because they cannot be seen and, once dispersed, cannot be recovered. However, many will not survive and persist if they are dispersed. Biological measures often provide better containment options. The following methods may help prevent dissemination of genetically modified microorganisms:
Insect and mite containment is difficult in a greenhouse facility. Entomologists who raise insects on greenhouse plants work constantly to prevent their escape and to control disease and parasites. The following procedures can be used to prevent dissemination of arthropods and other small animals:
11 Kahn, R. P. and S. B. Mathur. 1999. Containment Facilities and Safeguards: For Exotic Plant Pathogens and Pests. St. Paul, MN.: APS Press.
12 Gintec Shade Technologies Inc.: http://www.gintec-shade.com/greenhouse-screens.html
13 Adapted from "Greenhouse Screening for Insect Control." Rutgers Cooperative Extension. http://www.wvu.edu/~agexten/hortcult/greenhou/fs640.htm
14 Association of Official Seed Certifying Agencies (web version no longer available). Alternate: Animal and Plant Health Inspection Service: http://www.aphis.usda.gov/biotech/isolate.html
PHYSICAL CONTAINMENT
Glazing
Caulking and Sealing
Figure 1. Caulking around service intrusions
Figure 2. Sill caulking
Screening
ADULT INSECT
SCREEN HOLE SIZE mesh microns2 inches2 Leafminers 40 640 0.025 Silverleaf Whiteflies 52 460 0.018 Melon Aphids 78 340 0.013 Flower Thrips 132 190 0.0075
Figure 3. Negative pressure bench-top containment unit
Cages
Figure 4. Bugdorm® insect cage
Location
BIOLOGICAL CONTAINMENT
Plants
CROP FOUNDATION REGISTERED CERTIFIED
Alfalfa 6001,2 3001,2,3 1651,4
Corn (inbred lines) 6605,6
Corn (hybrid) 6606,7
Cotton (hybrid) 08 08 08
Grasses (cross pollinated) 9009, 10, 11 3009,10,11 1659,10,11,12
Mung Beans 013 013 013
Onion 5280 2640 1320
Peanuts 013 013 013
Pepper 20014 10014 3014
Rape (self pollinated) 66015 33015
Rape (cross pollinated) 132015 33015
Rice 1016 1016 1016
Soybeans 013 013 013
Sunflower 264017,18 264017,18 264017,18
Sunflower (hybrid) 264017,18 264017,18
Tomato 20014 10014 3014
Watermelon 264019 264019 132019
TABLE 6. Commercially important species that hybridize with wild relatives in the USA15
CULTIVATED SPECIES16 WILD RELATIVE Apium graveolens (celery) Same species
Daucus carota (carrot) Same species (wild carrot) Chenopodium quinoa (quingua [a grain]) C. berlandieri Beta vulgaris (beet) B. vulgaris var. maritima (hybrid is a weed) Chicorium intybus (chicory) Same species Helianthus annuus (sunflower) Same species Lactuca sativa (lettuce) L. serriola (wild lettuce) Brassica napus (oilseed rape; canola) Same species, B. campestris, B. juncea Brassica rapa (turnip) Same species (= B. campestris) Raphanus sativus (radish) Same species, R. raphanistrum Cucurbita pepo (squash) Same species (= C. texana, wild squash) Vaccinium macrocarpon (cranberry) Same species Vaccinium angustifolium (blueberry) Same species Trifolium spp. (clover) Same species Medicago sativa (alfalfa) Same species Liquidambar styraciflua (sweetgum) Same species Juglans regia (walnut) J. hindsii Asparagus officinalis (asparagus) Same species Picea glauca (spruce) Same species Avena sativa (oat) A. fatua (wild oats) Cynodon dactylon (bermuda grass) Same species Oryza sativa (rice) Same species (red rice) Sorghum bicolor (sorghum) S. halapense (johnsongrass) Amelanchier laevis (serviceberry) Same species Fragaria sp.(strawberry) F. virginiana, F. chiloensis, others Rubus spp. (raspberry, blackberry) Same species Populus alba x P. grandidentata (poplar) Populus species. (ten species listed as weed of unknown status in U.S.) Nicotiana tabacum (tobacco) Same species (escapes cultivation) Vitus vinifera (grape) Vitus spp. (wild grape)
Microorganisms
Insects