QUANTITATIVE DETECTION OF PENTACHLOROPHENOL-DEGRADING PSEUDOMONAS SP. UG30 IN SOIL BY A MOST-PROBABLE-NUMBER/POLYMERASE CHAIN REACTION PROTOCOL

K.T. Leung, A. Watt, H. Lee, and J.T. Trevors

University of Guelph, Guelph, Ontario, Canada NIG 2W1

Traditionally, biodegradation of pentachlorophenol (PCP) in soil is studied by the disappearance of the substrate. Because of the lack of an efficient method to enumerate PCP-degrading bacteria in environmental samples, little information is known about the dynamics of these bacteria in soil. In this study, the efficiency of a modified most-probable-number/polymerase chain reaction (MPN/PCR) protocol was compared to the traditional MPN/14C-PCP mineralization assay to quantify the cell density of PCP-degrading Pseudomonas sp. UG30 inoculated in a pristine soil. The 744-bp tetrachlorohydroquinone reductive dechlorination gene (pcpC) of UG30 was targeted for the MPN/PCR detection assay. The MPN/PCR protocol had a detection limit of 4 CFU/g of soil. A good coffelation was established between the MPN/PCR estimation and initial inoculum density ranging from 40 to 2 x 109 CFU/g of soil. However, the MPN/14C-PCP mineralization protocol underestimated the inoculum density by approximately 100-fold. Survival of UG30 in soil was monitored by the MPN/PCR assay. The cell density of the inoculum decreased from 1.4 x 108 to 6.8 x 106 CFU/g of soil in 10 days at 22°C.